HsaEX6065734 @ hg19
Exon Skipping
Gene
ENSG00000187950 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:23080]
Coordinates
chr12:29608182-29617635:-
Coord C1 exon
chr12:29617440-29617635
Coord A exon
chr12:29614787-29614941
Coord C2 exon
chr12:29608182-29608338
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCTGAATGTTTCTTCATTAGATG
3' ss Score
6.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGAGAAGGGCCAAACACATAATAGTGCATGAAGACTTTAACACACTAAGTTATGACTCTGACATTGCCCTAATACAACTAAGCTCTCCTCTGGAGTACAACTCGGTGGTGAGGCCAGTATGTCTCCCACACAGCGCAGAGCCTCTATTTTCCTCGGAGATCTGTGCTGTGACCGGATGGGGAAGCATCAGTGCAG
Seq A exon
ATGGTGGCCTAGCAAGTCGCCTACAGCAGATTCAAGTGCATGTGTTAGAAAGAGAGGTCTGTGAACACACTTACTATTCTGCCCATCCAGGAGGGATCACAGAGAAGATGATCTGTGCTGGCTTTGCAGCATCTGGAGAGAAAGATTTCTGCCAG
Seq C2 exon
GGAGACTCTGGTGGGCCACTAGTATGTAGACATGAAAATGGTCCCTTTGTCCTCTATGGCATTGTCAGCTGGGGAGCTGGCTGTGTCCAGCCATGGAAGCCGGGTGTATTTGCCAGAGTGATGATCTTCTTGGACTGGATCCAATCAAAAATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187950-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(27.9=100)
A:
PF0008921=Trypsin=FE(21.9=100)
C2:
PF0008921=Trypsin=PD(19.7=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCCAAACACATAATAGTGCA
R:
GCCATAGAGGACAAAGGGACC
Band lengths:
250-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)