BtaEX0025605 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11719631-11728405:+
Coord C1 exon
chr22:11719631-11719686
Coord A exon
chr22:11720187-11720370
Coord C2 exon
chr22:11728296-11728405
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGAAATGCCCCCTCCCCCAGGGT
3' ss Score
8.74
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGATGTGAAAGCTGGCAATATTCTTCTTGGAGAAGATGGCTCGGTACAGATTGCAG
Seq A exon
GGTGAGACTCCAGAATGGCTGAACTGCAGAACTATTGAGCAAGCAGATCATCTGAGAAAATCTCAGCTTGGTCCCACACTGCTGGAACAGTCAGTTGTTTGGCAGGAGGAAGATAACTACCCAAACCTTGAATTATTTCTTCAGCTTTAGAAGAAAATTTAGGCACACATCTTCATGTCCTCAG
Seq C2 exon
ACTTTGGAGTTAGTGCTTTTTTAGCAACTGGTGGTGACATTACTCGGAATAAAGTGAGAAAAACCTTTGTTGGAACACCTTGCTGGATGGCGCCTGAAGTTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(12.2=90.0)
A:
NO
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Inclusion Isoform:
ENSBTAT00000019872fB4948
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAAGCTGGCAATATTCTTCT
R:
TGTTCCATAACTTCAGGCGCC
Band lengths:
162-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development