HsaEX0045063 @ hg19
Exon Skipping
Gene
ENSG00000172939 | OXSR1
Description
oxidative-stress responsive 1 [Source:HGNC Symbol;Acc:8508]
Coordinates
chr3:38257587-38263178:+
Coord C1 exon
chr3:38257587-38257642
Coord A exon
chr3:38258164-38258349
Coord C2 exon
chr3:38263069-38263178
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGAAACACCCCCTCCTCCAGGCT
3' ss Score
6.31
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGATGTGAAAGCTGGAAACATTCTTCTTGGAGAAGATGGCTCAGTACAGATTGCAG
Seq A exon
GCTGAGACTCCAGAATGACTGTACCCAGGGATTGTCTAGCAAGCAGATCATCTGAGAAAACCTCAGCTTGGTCCCAGACTGCTAGAACAGTCAGGTGTTTGGCAGGAGGAAGATAATCACCCAAATCTTAAATTATTTCTTCATCTTTAAGAAGATAATTTAGGCGAACATCTTCATGTCCGTGAG
Seq C2 exon
ACTTTGGGGTTAGTGCTTTTTTAGCAACTGGTGGTGATATTACCCGAAATAAAGTGAGAAAGACCTTTGTTGGCACCCCTTGTTGGATGGCACCTGAAGTTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-'9-11,'9-9,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(12.2=90.0)
A:
NO
C2:
PF0006920=Pkinase=FE(13.1=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGAAAGCTGGAAACATTCT
R:
TCCATAACTTCAGGTGCCATCC
Band lengths:
162-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)