BtaEX0026338 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008419 | PDE2A
Description
Bos taurus phosphodiesterase 2A, cGMP-stimulated (PDE2A), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001256273]
Coordinates
chr15:52929622-52945305:-
Coord C1 exon
chr15:52945217-52945305
Coord A exon
chr15:52935742-52935851
Coord C2 exon
chr15:52929622-52929681
Length
110 bp
Sequences
Splice sites
3' ss Seq
GAATCGTATCCTCTTTTCAGAGA
3' ss Score
7.31
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGACGGTCTACACCTACCTGCTGGATGGGGAATCCCGGCTGGTGTGTGAGGAGCCCCCCCACGAGCTGCCCCAGGAGGGGAAAGTGCG
Seq A exon
AGAGGCTGTGATCTCCCGGAAGCGGCTGGGCTGCAATGGACTGGGCCCCTCAGACCTGCCTGGGAAGCCCTTGGCAAGGCTGGTGGCTCCACTGGCTCCTGACACCCAAG
Seq C2 exon
GTGCACTGTGGTCAGCTGAGTGACAATGAGGAGTGGAGCCTGCAAGCTGTGGAGAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008419_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGTCTACACCTACCTGCT
R:
ATGCTTCTCCACAGCTTGCAG
Band lengths:
147-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development