MmuEX6012696 @ mm9
Exon Skipping
Gene
ENSMUSG00000030653 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:108633056-108644206:+
Coord C1 exon
chr7:108633056-108633144
Coord A exon
chr7:108643085-108643194
Coord C2 exon
chr7:108644151-108644206
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGCCCATGTCTTATTTTCAGAGA
3' ss Score
7.36
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAGACTGTCTACACCTACCTGCTAGATGGGGAGTCCAGACTGGTGTGTGAGGACCCCCCTCATGAGCTGCCACAGGAAGGAAAAATTCG
Seq A exon
AGAAGCTGTGATCTCTCAGAAGCGGCTGAGTTGCAATGGGCTGGGACCTTCGGACCTACTGGGAAAGCCCTTGGCCAGGCTGGTGGCTCCACTGGCTCCTGACATGCAAG
Seq C2 exon
TGCTGGTCATACCCCTGCTGGACAAGGAGACTGGAAGTGTGGCAGCTGTCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030653-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGTCTACACCTACCTGCT
R:
CAAGATGACAGCTGCCACACT
Band lengths:
144-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: