BtaEX0027050 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:498276-503459:+
Coord C1 exon
chr25:498276-498819
Coord A exon
chr25:500882-500963
Coord C2 exon
chr25:502761-503459
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCACTGCCCCACAGATG
3' ss Score
10.55
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
ACTGTGGGCTTGAACCGCAGCGCCCCTCTCTGTGCGTGGCGTAGCCCCCTGGGCCCAGACTATGATGGAAGGAATGTTCAGGTTTCTCAGAGTCCTCCTGGCGTGGGTCTCGCCCTCCTGACCCTGGACATTTGCTGACAGTCCTGAGCCCCGTCATACCGGGCCCTGGCCTGGACTCCTCTCCTTCTCCTGGGGAGGATTCAGATTCAGGGGGCAGCCGGAATCAGCTGCCTCCAGCCCCCAGGGTCTAGGAGGCCTGCACTTTGGGGCCAGCAGCTGAAGCCTGGATGTCTCTGGCGTGTTGGGCCAGCCGCCAGCGCTTACCCGGGCCGGCTCTCCATTCAGTGCTCCAGCCCCAGCCTTCTAATCAGAGGGAGGCAGGCAGGGTAGGTGTGGCTGGGCTGGGCTGGGCTGGGCAGGGGTGCGGCTCCTCACTGTCCCCTGTTTTCAGAGGTGCCCTGGATGCCGAGACTCCTGCAGCTTCTCTGGGCCCAGCTGAG
Seq A exon
ATGGGAACACCACCCTCTGCCCTCTGCTGCCTTCCCCAGACATGAGGAGCTCTTCTTCTCCTTTCTTTCTTTCTTTTAATAG
Seq C2 exon
CGGCCCCGGCATGGTGCTCAAGGCCTTCTTCCCCACGTGCTGCGCCTCGGCAGACAGCGGCCTCCTGGTGGGACGGTGGGTTCCAGAGCAGAGCAGTGCTGTGGTTCTGGCTGTGGTGCACTTTCCCTTCATCCCCGTCCAGGTCAAGGAGCTCCTGGCCCAGGTGCAGCAGGCCAGCCAGGTGGGCGTGGCTGTGCTGGGCACCTGGTGCCACCGCCGGCAGGAGCCGGAGGAGAGCCTGGGCCACTTCCTTGAGGGCCTAGGCACCCTCTTCTCCCACGAGCCCTGGCTGCAGCTGTGTCGGGAGAGGGGCAGCAAGTCCTGGAACTGCAAGGCCACCCGCCGGCAGGGGCCCACGCCCCTCGCCCCTGCCTGCGAGGACCAGGTCATGCTCATCTTCTACGACCAGCGCAAGGTGCTGCTGTCACGGCTGCACCCGCCCGCAGCCTTGCCCGAGCGCCAGGCTGGGGATGCCACAGCCAGCGCGGGTGGCCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.043
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAATCAGAGGGAGGCAGGC
R:
AAGAAGGCCTTGAGCACCATG
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development