BtaEX0027051 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:498276-505075:+
Coord C1 exon
chr25:498276-498819
Coord A exon
chr25:502761-503459
Coord C2 exon
chr25:504944-505075
Length
699 bp
Sequences
Splice sites
3' ss Seq
TGAGCCCTCCTCTTTTCCAGCGG
3' ss Score
8.51
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ACTGTGGGCTTGAACCGCAGCGCCCCTCTCTGTGCGTGGCGTAGCCCCCTGGGCCCAGACTATGATGGAAGGAATGTTCAGGTTTCTCAGAGTCCTCCTGGCGTGGGTCTCGCCCTCCTGACCCTGGACATTTGCTGACAGTCCTGAGCCCCGTCATACCGGGCCCTGGCCTGGACTCCTCTCCTTCTCCTGGGGAGGATTCAGATTCAGGGGGCAGCCGGAATCAGCTGCCTCCAGCCCCCAGGGTCTAGGAGGCCTGCACTTTGGGGCCAGCAGCTGAAGCCTGGATGTCTCTGGCGTGTTGGGCCAGCCGCCAGCGCTTACCCGGGCCGGCTCTCCATTCAGTGCTCCAGCCCCAGCCTTCTAATCAGAGGGAGGCAGGCAGGGTAGGTGTGGCTGGGCTGGGCTGGGCTGGGCAGGGGTGCGGCTCCTCACTGTCCCCTGTTTTCAGAGGTGCCCTGGATGCCGAGACTCCTGCAGCTTCTCTGGGCCCAGCTGAG
Seq A exon
CGGCCCCGGCATGGTGCTCAAGGCCTTCTTCCCCACGTGCTGCGCCTCGGCAGACAGCGGCCTCCTGGTGGGACGGTGGGTTCCAGAGCAGAGCAGTGCTGTGGTTCTGGCTGTGGTGCACTTTCCCTTCATCCCCGTCCAGGTCAAGGAGCTCCTGGCCCAGGTGCAGCAGGCCAGCCAGGTGGGCGTGGCTGTGCTGGGCACCTGGTGCCACCGCCGGCAGGAGCCGGAGGAGAGCCTGGGCCACTTCCTTGAGGGCCTAGGCACCCTCTTCTCCCACGAGCCCTGGCTGCAGCTGTGTCGGGAGAGGGGCAGCAAGTCCTGGAACTGCAAGGCCACCCGCCGGCAGGGGCCCACGCCCCTCGCCCCTGCCTGCGAGGACCAGGTCATGCTCATCTTCTACGACCAGCGCAAGGTGCTGCTGTCACGGCTGCACCCGCCCGCAGCCTTGCCCGAGCGCCAGGCTGGGGATGCCACAGCCAGCGCGGGTGGCCTGGCTGCCGTCTTTGACACAGTGGCGCGGAGTGAGGTGCTCTTCCAAAGTGACCGGTTCGATGAGGGCCCCGTGCGGCTGACGCACTGGCAGTCAGAGGGCGTGGAGGCCAGCATCCTCGTGGAGCTGGCCAAGCGCGCGGCGGGGCCTGTCTGCCTGCTGCTGGCCTGTCTGCTGTCACTGGTCTCCGCTGCCAGCGCCTGTCG
Seq C2 exon
GGTGTTCCGGCCGTGGCCACTGTCCTTCATCTGGAGCAAGCTGTCTACCTGCGAGCAGCTCAGGCATCGGCTGGACCAGCTCACGCTCGTCGTCAGTGCCCACAGGGCCGAGGGCCCTGCCCAGCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTCAGATTCAGGGGGCA
R:
AGGTAGACAGCTTGCTCCAGA
Band lengths:
355-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development