DreEX6016761 @ danRer10
Exon Skipping
Gene
ENSDARG00000038097 | pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
Coordinates
chr3:26673634-26675161:-
Coord C1 exon
chr3:26674900-26675161
Coord A exon
chr3:26673842-26674581
Coord C2 exon
chr3:26673634-26673765
Length
740 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTTGTGCCCACACAGGAC
3' ss Score
8.35
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TCACCCGGCGGAATTTTAACGACGGACTGTAAACAATATGAACGTTACGGTCCGTCTAATCCATTGAAAAACTGGTTTCCAGTTAGTTTAACAAAAGCACGTGCTGGATTATTCAATAGCATATCTATTACAATTGCCCTATGATTTCGCGTTATTTTTTGAGATAATGCCAGCGTTGATTAACGCACTTAGTAACGTTAATTTAATCGTCGCCTCCTACAGAACAACTTCTCAGAATTTCTCGACCTTCAAAATCAACAAG
Seq A exon
GACTGTATATTTCGCTGTTGGTGGACTTTATAGCACACAGACATGGTGCTGAAGATCTTCTTCCCTCAATGCTGCAACACTGCTGACAGTGGCCTGCTGGTCGGGCGCTGGATCCCAGGACACAATTCTGCTGTGGTACTAGCTGTCGTTCACTATCCATTCATACCCGGACAGGTAAAAAAGTACTTGAGTGAGATCCAGAGCCAGACTCAAGTGGATCTTGCCGTGCTGGGTTCCTGGAGTATGCCAAAAGAAGGTCAAGAAGGATTGGACAGCTTCCTCAAAGACCTGAGCACCATCTTTCCTCAGAAATGTTGGCTGCAGTTGAGCCGTGAGATTGGCAAAAGAGGCTTTACATGTCGGGTGGTTCAAAACAATGGGATGCTTCTACAGGACAAAGAGCAGAAGAGTGATGTAGATGGCAGTGAAGAAGATAAGATCATCCTCGTTCATTATGACCAAAGGAAGGTGATGCTGTCGCAGCTTCATCCGGTGCAAGAGGCTGACCAAAAGTCTGAAATCGAGCCGTCAGAGCTGCGCTTGGTCTTCCAAACAGTTGCTCAAAGTCAGCCTCTGTTTTTCCTGGATAAATACGACGACGGGCCGCTGAAACTCACCCACTGGCAGTCTGAAGGGAGGGAGGCTAGTATTATTGCAGAGCTTCTTAAACAAGCATCTGTGCCGGTGTGCATCTGCCTCACGTGGTTGCTTTCTCTTTGGCTTTGGTTTTGCAGCTTTAG
Seq C2 exon
GATTTTAAATATACCTCCTGTGAAGTTCATTACAAGCAAGCTGTCCACGTGTGTTCAGTCGGGTTACAGGGCCGTTCATTTTAAGACCGTTTTCTCCCCTAAAAAAGCTGATACACACATGGATTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038097-'1-2,'1-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0502410=Gpi1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGGCGGAATTTTAACGA
R:
AAATGAACGGCCCTGTAACCC
Band lengths:
342-1082
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]