RnoEX0065871 @ rn6
Exon Skipping
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15297070-15304785:-
Coord C1 exon
chr10:15304685-15304785
Coord A exon
chr10:15299833-15300531
Coord C2 exon
chr10:15297070-15297201
Length
699 bp
Sequences
Splice sites
3' ss Seq
CGCTCTCTCCTCTCTTGCAGGGC
3' ss Score
13.09
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
CTGGGAGCCGCGAACACAGTCGTCCTCCCGGGCCCGCCGAACGCGGTGCTCAACCAAGTCCCTTCCCTACCGCCTGGGTACGCGGCCCGGGGGATCAGCCG
Seq A exon
GGCCCCCGGCATGGTGCTCAAGGCCTTCTTCCCCACATGCTGTGCCTCAGCAGACAGTGGCCTATTGGTGGGACGGTGGGTCCCAGGACAGAATAGTGCTGTGATCCTGGCTGTGGTGCACTTTCCCTTCATCCCCATCCAAGTCAAGGAGCTCCTGGCCCAGGTGCAGAAGGCTAGCCAAGTACAAGTGACTGTGCTAGGCACCTGGTGCCACCGTCAGCAGGAACCAGAGGAGAGCCTGGGGAAATTCCTAGAGGGCCTGGGTGCCATCTTCTCCCATAATCCCTGGTTGCAGCTATGCCGGGAGAAGGGCACCAGATTCTGGAGCTGCAAGGCCACTTACCATCAGATGTCTAGCACTCTGGACACACCCACTGAAGACCAGGTCATGCTCATTTTCTATGACCAGCGCAAGCTGCTGCTCTCCTGGCTGCATCCACCTCCGGTACTACCTGACTGCCAGATTGGAGACAGCACAGCCAGCACTGGAGGCCTAGCTGACATCTTTGACACAGTGGCACGCAGTGAGGTTCTCTTCCGAAATGACCAGTTTGATGAGGGACCTGTGCGCCTGAGCCACTGGCAATCAGAGGGAGTGGAGGCCAGTATACTTGTGGAGCTGGCAAAGCGGGCCTCTGGGCCTGTCTGCCTGCTGCTGGCTTCTCTGCTGTCCCTGATCTCAGCAGCCAGTGCTTGTCG
Seq C2 exon
GCTATGGAAGCTGGGGCCTCTTGCCTTCATCAGAAGCAAGCTCTCCACTTGTGAGCAGCTCCAGCACCGGCTGAAGCACCTCTCATTCATCTTCAGCACCGAGAAAGCCCAGAGTCCCATGCAGCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140-'7-4,'7-2,11-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0502410=Gpi1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCGCGAACACAGTC
R:
CTCATCAGCTGCATGGGACTC
Band lengths:
230-929
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]