MmuEX1020037 @ mm10
Exon Skipping
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25935003-25942048:-
Coord C1 exon
chr17:25941815-25942048
Coord A exon
chr17:25936764-25937462
Coord C2 exon
chr17:25935003-25935134
Length
699 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCTCGTCTCTTGCAGGGC
3' ss Score
13.33
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
TTTGATGACAGGAGCCGCGCGCGCGGAACTCTCGGGCTCAGGCGATGGACAGCCCGGGCATGTTTGGGGACCGGACCGTCGCGCGACAACGCCGCGGAGCCGGCGGAAATGGTGCTGATGTCCCGCGGCGGGCCTGGGAGCCGCAAGCACGGTCGTCCTCCCGGGCCCGCCGAACGCAGTGCCCAACCCAGTTCCTTCCCTACCGCTCGGGGACGCGGCCCCGGGGACCAGCTG
Seq A exon
GGCCCCCAGCATGGTGCTCAAGGTCTTCTTCCCCACGTGCTGTGCCTCGGCAGACAGTGGCCTGTTAGTGGGACGATGGGTTCCAGGACAGAGCAGTGCTGTGATCCTGGCCGTGGTGCACTTTCCCTTCATCCCCATCCAAGTCAAGGAGCTCCTGGCCCAGGTGCAGAAGGCCAGTCAAGTACCAGTGGCTGTGCTAGGGACCTGGTGCCACCGTCAGCAGGAACCGCAGGAGAGCCTGGGGAATTTCCTGGAGGGCCTGGGCACCATCTTCTCCCATGACCCCTGGTTGCAGCTCTGCCGGGAGAGGGGTACCAGACTCTGGAGCTGCAAGGCCACTTACCCGCAGATGTCTAACCCTCTGGACATGCACCCCGAAGAGCAGGTCATGCTCATCTTCTATGATCAGCGCAAGCTGCTGCTCTCCTGGTTGCATCCGCCTCCAGTCCTGCCTGCCTGCCAGATGGGAGACACCACAGCCAGCACCGGAGGCCTAGCTGACATCTTTGACACAGTGGCACGCAGCGAGGTGCTCTTCCGAAATGACCAATTTGATGAGAGACCCGTACGCCTGAGCCACTGGCAATCAGAGGGAGTGGAGGCCAGCATACTTGTGGAGTTGGCAAAGCGGGCCTCTGGGCCTGTCTGCCTGCTGCTGGCTTCTCTGTTGTCCCTGATCTCAGCAGCTAGTGCTTGCCG
Seq C2 exon
GCTATGGAAGCTGTGGCCACTTTCCTTCATCAGAAGCAAGCTCTCCACTTGTGAGCAGCTCCATCACCGGCTGAAGCACCTCTCCTTCATCTTCAGCACGGAGAAAGCCCAGAATCCCATGCAGCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-'5-19,'5-15,14-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0502410=Gpi1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATGACAGGAGCCGCG
R:
GGATTCTGGGCTTTCTCCGTG
Band lengths:
351-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types