BtaEX0027200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003387 | PIP5KL1
Description
Bos taurus phosphatidylinositol-4-phosphate 5-kinase-like 1 (PIP5KL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075847]
Coordinates
chr11:98603898-98605703:-
Coord C1 exon
chr11:98605648-98605703
Coord A exon
chr11:98604305-98604417
Coord C2 exon
chr11:98603898-98604008
Length
113 bp
Sequences
Splice sites
3' ss Seq
CCCCAACCCCTCACCTCCAGGTA
3' ss Score
8.28
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
AAATACTTCATCGTCATGCAGAGCGTCTTCTATCCCGCCGGCCGCATCTCTGAGAG
Seq A exon
GTATGACATCAAGGGCTGCGAGGTGAGCCGTTGGGTGGAGCCCGCCCCTGAGGGCAGCGTCCTTGTTCTGGTGCTGAAAGACCTCAACTTTCAGGGCAAGACCATCAATCTGG
Seq C2 exon
GGCCCCAGAGGAGCTGGTTCCTCCGCCAGATGGAATTGGACACCGCCTTCCTCCGGGAGCTCAACGTACTGGATTACAGCCTTCTGATGGCCTTCCAGCGTCTTCATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003387-'8-9,'8-7,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(6.6=100)
A:
PF0150413=PIP5K=FE(13.9=100)
C2:
PF0150413=PIP5K=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCGTCATGCAGAGCGT
R:
CCTCATGAAGACGCTGGAAGG
Band lengths:
162-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development