MmuEX6100571 @ mm10
Exon Skipping
Gene
ENSMUSG00000046854 | Pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:MGI Symbol;Acc:MGI:2448520]
Coordinates
chr2:32579058-32580429:+
Coord C1 exon
chr2:32579058-32579113
Coord A exon
chr2:32579941-32580053
Coord C2 exon
chr2:32580279-32580429
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTGTATGTCCTACCTCCCAGGTA
3' ss Score
9.21
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAGTACTTCATCATCATGCAGTGCATCTTCTACCCTACCAGCCGCATTTCTGAGAG
Seq A exon
GTATGACATCAAGGGCTGCAACATAAGCCGCTGGGTAGATCCAGCCCCTGAGGGCAGCCCCCTTGTCTTGGTGCTGAAGGACCTCAACTTTCAAGAAAAGACCATGAGATTGG
Seq C2 exon
GAGCCCAGCGGAGCTGGTTCCTCCGGCAGATGGAGCTAGACACCGCCTTCCTGCGGGAGGTGAATGTACTGGATTACAGCCTCCTGGTGGCCATCCAGTTTCTCCACGAAGACGAGAAGGGCATTCACCACTCTGTCTTCAGCACATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046854-'13-19,'13-13,15-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(6.6=100)
A:
PF0150413=PIP5K=FE(14.0=100)
C2:
PF0150413=PIP5K=FE(18.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACTTCATCATCATGCAGTGCA
R:
ATGTGCTGAAGACAGAGTGGTG
Band lengths:
202-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types