BtaEX0027302 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55236308-55241235:-
Coord C1 exon
chr3:55241173-55241235
Coord A exon
chr3:55239526-55239602
Coord C2 exon
chr3:55236308-55236450
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTATCCTGAACAGAGA
3' ss Score
8.13
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATTTTATGCTGCATGTGTAGTTCTTGGGTTGCAGTATTTACATGAACACAAAATTGTTTATAG
Seq A exon
AGATTTGAAATTGGATAACTTATTACTAGATACAGAGGGCTTTGTGAAAATTGCTGACTTTGGTCTTTGCAAAGAAG
Seq C2 exon
GAATGGGATATGGAGACAGAACAAGCACATTTTGTGGCACTCCTGAGTTTCTTGCCCCAGAAGTTTTAACAGAAACATCCTATACAAGGGCTGTAGATTGGTGGGGCCTTGGTGTCCTTATATATGAAATGCTCGTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900-'32-28,'32-27,33-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCATGTGTAGTTCTTGGG
R:
CAAGGCCCCACCAATCTACAG
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development