RnoEX6011824 @ rn6
Exon Skipping
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248743158-248749791:-
Coord C1 exon
chr2:248749729-248749791
Coord A exon
chr2:248744057-248744133
Coord C2 exon
chr2:248743158-248743300
Length
77 bp
Sequences
Splice sites
3' ss Seq
CGTGCTTTCGTCTTGAGCAGAGA
3' ss Score
7.1
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATTTTATGCAGCATGTGTAGTTCTTGGATTGCAATATTTACATGAACACAAAATTGTTTATAG
Seq A exon
AGACTTGAAGTTGGATAACCTGTTGCTGGATACAGAAGGCTTCGTGAAGATTGCTGACTTTGGTCTTTGCAAAGAAG
Seq C2 exon
GAATGGGGTATGGAGATAGGACAAGCACATTTTGTGGTACTCCTGAATTTCTTGCCCCAGAAGTATTAACAGAAACGTCGTACACAAGGGCTGTAGATTGGTGGGGCCTTGGCGTACTTATATATGAAATGCTCGTCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317-'44-34,'44-33,45-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCATGTGTAGTTCTTGGA
R:
TATAAGTACGCCAAGGCCCCA
Band lengths:
179-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]