BtaEX0027744 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105622245-105627260:+
Coord C1 exon
chr11:105622245-105622362
Coord A exon
chr11:105622859-105622999
Coord C2 exon
chr11:105627160-105627260
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATGCTGGCGCCTCCCAGCAGATC
3' ss Score
5.81
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAGAGCCAGGCCATCCCGCTCATGTCTGTGGCCAGCGTGACTGCCGGGAAGGCCAAGAAGCCGACGTGCTGCAATCTGGAGGAGAGGCCGCCTCGGCCCCAGGAGCCCTGCGGCCCAG
Seq A exon
ATCGTGGGGGCAGCCGCGCCACAGTCTGTGGTCCTCTGCCCAAGAGGAGCCACTCCGTCCTGCTACCTTCTGTCTACGAAGAGGTGGCGGCTGAGCTCAGCCAGGCCCAGGCTGGCATCCAGGCCTCTTCGGCTCCTGCAG
Seq C2 exon
GGGCCACAGCAGGTGCCGCCTCAGATCTGAGGGTGGTGTGTGACCGAGCCCGGGTCCTGCCACACACAGAGGAGCACCCCGGGGGCGCTGTGGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126_MULTIEX1-5/6=4-6
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.469 C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCAGGCCATCCCG
R:
GTGCTCCTCTGTGTGTGGC
Band lengths:
195-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development