MmuEX0036061 @ mm9
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24852747-24858235:+
Coord C1 exon
chr2:24852747-24852870
Coord A exon
chr2:24854142-24854279
Coord C2 exon
chr2:24858135-24858235
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCGTTCCTATCTCCCCCAGATC
3' ss Score
10.55
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAGAGCCAGGCCATCCCTCTCTTGTCAGTAGCAAGTGTGGCTGGACGAGCCAAGAGACAGATGTCATATGGTCCAGAGGAGCAGCTTGAGAGGTCCCTACGGCCCTCGGAGTTCAGCAGCTCAG
Seq A exon
ATCATGGGAGCAGCTGTGTGACAGTCTCTGGGCCTCTGCTGAAGAGGAGCTGCTCAGTGCCTCTGCCTTCTAACCATGGGGAGGTGGATGAGCTCAGACAGTCCCAGGGAAGTGGCTCTAACACTTCTGCCTTCCAAG
Seq C2 exon
AAAGCCATGAGGGAGCCACCTCAGACCTGGGGATGGCATACAACCGTGCCAGGATTTTGCCACACTCTGATGAGCAACTTGGGAACTCTTTGGCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-'19-22,'19-19,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.534 C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATCCCTCTCTTGTCAG
R:
CTTGCTGGCCAAAGAGTTCCC
Band lengths:
218-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: