BtaEX0028336 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046669 | PRAME
Description
Bos taurus preferentially expressed antigen in melanoma (PRAME), mRNA. [Source:RefSeq mRNA;Acc:NM_001077979]
Coordinates
chr17:25119312-25121343:+
Coord C1 exon
chr17:25119312-25119631
Coord A exon
chr17:25119916-25120518
Coord C2 exon
chr17:25121277-25121343
Length
603 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTGCGGCCTCACAGGCA
3' ss Score
9.4
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACTCATTCCAGAGGAGGTTCTTCAGGATGAACGTCCAGGCCCCACCCCGACTCCTGGAGCTGGGCGCACAGTGCCTGCTGCGCAATGAGGCCTTGGCCATCATGGCTCTGGAGGAGCTGCCCATCGAGCTCTTTCCACCACTGTTTATGGAGGCCTTTGCTGGAAGGCACACAGAGGCCCTGAAGGCGATGGTGCAGGCCTGGCCCTTCCCCTGCCTCCCACTGGGGGCCCTGATGCAAGACCACCAGCCTCATCTGGACACCTTCCAGGCAGCACTCGATGGTCTGGATGTCCTGCTTGCTCAGGAGGTCCGCCCCAG
Seq A exon
GCAGTGGAAGCTGCAGGTGCTGGACTTGCGCCGGAAAAACAACCAGGACTTCTGGACCCTGTGGTCCGGGATGAAGGTCAGTGTTTGCTCACTGCTGGAGCCTGAGCCAGACCAACCAATGCAGAAGAGGTGCAGGGTGGAGGCGCAGGCGGGGCTGAAGCCAGAACAGGCCCCTGTGGAGGTGCTGGTCGACCTGTGCATCAAGGAGGACACTCTGGATGAGACCCTCAGCTACCTGCTGAAGAAGGCCAAGAAGAGGGGGAAGCTGCTGCACATCCGCTGCCAGAAGCTGAGGATCTTCACCATGCCCATGAAGAGCATCAGGAAGATCCTGAAGGTGGTGCAGCTGGACTCCATTCAGGACCTGGAGGTCAACTGCATCTGGAAGCTGGCCACGCTGAGCAGGTTCCTGCCGCACCTGGGCCGGATGGGCAACCTGCGCCGGCTGCTGCTGTCTCGCATCCACATATTGCCACATACCACCCCGGACCAGGAGAACTGCGTCAACCAGCTCAGTGCACAGTTCCTGAACCTGCCCCACCTGCAGGAGCTCTACCTGGACTCCATCTCCTTCCTCGAGGGCCGCCTGCACCAGGTGCTCAG
Seq C2 exon
GTGCCTGAACACCCCTCTGGAGACCCTGTCGATCACCAATTGCCTGATTTCGGAGTCAGACCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046669_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGATGAACGTCCAGGC
R:
GCAATTGGTGATCGACAGGGT
Band lengths:
343-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development