RnoEX6024345 @ rn6
Exon Skipping
Gene
ENSRNOG00000037035 | Pramef12
Description
PRAME family member 12 [Source:RGD Symbol;Acc:1587431]
Coordinates
chr5:162385173-162388620:+
Coord C1 exon
chr5:162385173-162385465
Coord A exon
chr5:162385952-162386536
Coord C2 exon
chr5:162388110-162388620
Length
585 bp
Sequences
Splice sites
3' ss Seq
ACTTCTACTTTCTCCCACAGTAA
3' ss Score
9.53
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGAGCTTGCAGGCCACACCCACACTCCTGCAGCTAGCGATGCAGAGTCTGCTGAGGGACGAGGCCGTGGCCATCTCTGCTCTGCCGGACCTGCCCATGGAGCTCTTCCCACCACTCTTCAAGGATGCCCTCACCCACAAACGATCTAACATCCTGAGGAGGATGGTGCAGGTCTGGCCGTTTCCCTGTCTCCCACTGGGTGGTCTGATGAAAATGAAGGCACCGTACCTGGATGTCTTACAAACCATACTGGATGGGATTGACGGCCTGCTCGACCAGAATATTCACCCCAG
Seq A exon
TAATTACCGACTTCGAATTCTGGATTTGCGGGCTTTGCACAAAACCTTCTGGACCGTGTGGGCTGGAGATAAGACGGCGTCTTGCATTTCAGAGGCCAAGTGTAGGAGAAGGTCACAGAGGAGAGGTCTGGAAACGGTAGCCAAGCCAGAGTCATTGAAAGTGTTTATAGACCTGTGCCTCAAGCCGAGAGCCTTGAATGCATGCCTGTCCTATGTCCTCCTGTGGGCGAGAAAGAGAAAAGCTTTGCTGCAGCTTGGCTGTAAGAAGCTGAAGATCAACACGATAGCTCTCCAGAAAAACGTGAAGGTTCTGGAATTGCTAGATCTGGACTGTATGGAGGAGGTGGAAGTGTGCTGCACCTGGAAGCTGTCTACTCTGGCCATCTTTGCTCCTTACCTGGGCCAAATGAAAAACCTTCTCTCACTCATTCTCTCTCACATCCATGTCCCTGCCTCCATTTCCCCTGAGGAGAAGAATCAGTTGGTCAGCCAGTTCACCTCTCAGTTTCCCAACCTGCAGTGCCTCCAGGAGCTCTCCCTGGACTCTGCCTGCTTCCTCAAAGGTCATATGGACCAGGTGTTCAG
Seq C2 exon
GTGCCTGGAGGCCCCCTTGGAGATGCTCTCTATCACTGATTCCCAGCTATCAGAATCAGACTTGAAGGCCCTGTCCCAGTGTCCAGGCATCTATCAGCTCAAACACCTGAACCTGAGTGGTGTCATTCTGACCAACATAAATCCCGAGCCCCTTCGAGTCCTGCTGGAGAGAGTTGCAGCCACCCTGAGGATCCTGGATTTGGAGAACTGTATGATTAAGGACTCCCAACTCAGTGTCTTCCTGCCTGCCCTGAGCCAATGTGTTCAGCTCATCATGTTCAACTACTTAAGGAACCCCATCTCAGTGGCTGCCCTGGAGAGCCTGCTTCTCCACACCTCCAAGCTGAGCTGCCTAGGCTTAGAGATGTACTCTACCCCTTGGGAGATTTTTGGTGCCCAGAGTGATTCCTATCATAAGAGGCTAGATGAGCTTCGAGAGGAGTTGAGCAAGACAATGATGCATCTAGAACACACCAGGACCGTCTGGTTCAGCGTCGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037035-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127992=LRR_4=WD(100=27.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACTCTTCAAGGATGCC
R:
TCGAAGGGGCTCGGGATTTAT
Band lengths:
342-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]