MmuEX6097700 @ mm9
Exon Skipping
Gene
ENSMUSG00000046862 | Pramef8
Description
PRAME family member 8 [Source:MGI Symbol;Acc:MGI:2140473]
Coordinates
chr4:143006543-143010994:+
Coord C1 exon
chr4:143006543-143006855
Coord A exon
chr4:143007276-143007863
Coord C2 exon
chr4:143008741-143010994
Length
588 bp
Sequences
Splice sites
3' ss Seq
CTACCTTTTTTCACTCACAGAAG
3' ss Score
9.4
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATCCTTGACACTGAAGATCTGAAGGATGAGTGTCCAGGACCCACCCACACTCCTGCAGCTGTCAGTACAGAGACTACTGAGGGACGAGGCCCTGGCCATTTCTTCTCTGCAGTACCTTCCCAGGGCGCTTTTCCCACTGCTCTTCAAGGAAGCCTTCAATCACAGACAAACTAATGTCCTGAGGGCCATGGTGGCAGTGTGGCCCTTTCCCTTCCTCCCTCTGGGGACCCTGATGAAGACTCCCCACCTGGAGATCTTGCAGGCTGTGCTGGATGGAGTAGACATGCTTTGGACACAGAAGGTTCTTCCCAG
Seq A exon
AAGGAGGAAGCTCCAAGTGCTGGACCTGAGGAATGTGTACCATGACTTCTGGGATGTTTGGGTTGGACCAGAGGATGGAGACCACTCAGCAGAGACTGTGTGTGAAAAGCAGATAGCAAAGCGCCTTCATCAATATGCACTGAGGCGACGTTTGAAGGTGGTCACTGACCTGTGCCTCAGGTTCCATTTGAATGAACACCAAGCATACTTGTTACAGTGGGCCCAGCAGAGAAGAAGTTCCATACGGCTATGCTGTGTGAAGATGCAGATTTGGGCTTTGCCTGTGTACACTGTCAGGAAGGTCTTGATGGTGTTCCAGCCAGACAGCATCCAAGAATTGGAACTAAATACAGGTTGGAGCCTGTCCACTCTGGTGCATTTTGCATCTTACCTGGACCAGATGAGAAACCTTCAAAAACTCCTTTTAACACGGATTCACAAGAACACCTTCAAGGTTCTAAATACCTCCTCGGACATCCAGAAGTGTATCACCAAGTTTGTCTCTCAGTTCTCCAAACTCAACTCTCTCCAGCATCTCTCCATGAATGGCATCTACTTTTCCAGTGAGCACATGAAACAGTTGTTCAG
Seq C2 exon
GTACCTGAAGACCCCGTTGGAGACTCTGTCCATCACCATGTGCAAGCTTTCACATTTAGACTTGAATTCCTTGTCCCAGAGTCAGAGCCTCCATCAGCTCAAACAGCTGAACCTGAGACTTGTGAAGTTGATTGACTTACGTCCTGTGCCTTTCCACGACCTCCTCAGGAGTGTTGCAGGCACCCTGCAGACCCTAGAACTGGAGGGCTGTTGGATGGTGGACTCCCAGCTCACTGCCCTCCTGCCTGCCCTGAGCCAGTGTTCCCAGCTCACCAGGGTCAACTTCTATGACAATGACATCTCCATGGCTGTTCTAAAGGACCTTCTGTATCACACAGCCAGTCTGAGCCAGCTGACCCAGGAGCTGTATCCTGCCCCTCTGGAGTGCTATGATGACACGGGTGATGTCCTTATGGGAAGATTTGTCCAACTTTGTCCTGAGCTTATGGAGACACTCATTACTGTAAGGCAGCCCAAGAATGTCTCCTTTGCTACGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046862-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGATCTTGCAGGCTGTG
R:
AGAAGTTGACCCTGGTGAGCT
Band lengths:
352-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: