MmuEX6097700 @ mm10
Exon Skipping
Gene
ENSMUSG00000046862 | Pramef8
Description
PRAME family member 8 [Source:MGI Symbol;Acc:MGI:2140473]
Coordinates
chr4:143416640-143421091:+
Coord C1 exon
chr4:143416640-143416952
Coord A exon
chr4:143417373-143417960
Coord C2 exon
chr4:143418838-143421091
Length
588 bp
Sequences
Splice sites
3' ss Seq
CTACCTTTTTTCACTCACAGAAG
3' ss Score
9.4
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GATCCTTGACACTGAAGATCTGAAGGATGAGTGTCCAGGACCCACCCACACTCCTGCAGCTGTCAGTACAGAGACTACTGAGGGACGAGGCCCTGGCCATTTCTTCTCTGCAGTACCTTCCCAGGGCGCTTTTCCCACTGCTCTTCAAGGAAGCCTTCAATCACAGACAAACTAATGTCCTGAGGGCCATGGTGGCAGTGTGGCCCTTTCCCTTCCTCCCTCTGGGGACCCTGATGAAGACTCCCCACCTGGAGATCTTGCAGGCTGTGCTGGATGGAGTAGACATGCTTTGGACACAGAAGGTTCTTCCCAG
Seq A exon
AAGGAGGAAGCTCCAAGTGCTGGACCTGAGGAATGTGTACCATGACTTCTGGGATGTTTGGGTTGGACCAGAGGATGGAGACCACTCAGCAGAGACTGTGTGTGAAAAGCAGATAGCAAAGCGCCTTCATCAATATGCACTGAGGCGACGTTTGAAGGTGGTCACTGACCTGTGCCTCAGGTTCCATTTGAATGAACACCAAGCATACTTGTTACAGTGGGCCCAGCAGAGAAGAAGTTCCATACGGCTATGCTGTGTGAAGATGCAGATTTGGGCTTTGCCTGTGTACACTGTCAGGAAGGTCTTGATGGTGTTCCAGCCAGACAGCATCCAAGAATTGGAACTAAATACAGGTTGGAGCCTGTCCACTCTGGTGCATTTTGCATCTTACCTGGACCAGATGAGAAACCTTCAAAAACTCCTTTTAACACGGATTCACAAGAACACCTTCAAGGTTCTAAATACCTCCTCGGACATCCAGAAGTGTATCACCAAGTTTGTCTCTCAGTTCTCCAAACTCAACTCTCTCCAGCATCTCTCCATGAATGGCATCTACTTTTCCAGTGAGCACATGAAACAGTTGTTCAG
Seq C2 exon
GTACCTGAAGACCCCGTTGGAGACTCTGTCCATCACCATGTGCAAGCTTTCACATTTAGACTTGAATTCCTTGTCCCAGAGTCAGAGCCTCCATCAGCTCAAACAGCTGAACCTGAGACTTGTGAAGTTGATTGACTTACGTCCTGTGCCTTTCCACGACCTCCTCAGGAGTGTTGCAGGCACCCTGCAGACCCTAGAACTGGAGGGCTGTTGGATGGTGGACTCCCAGCTCACTGCCCTCCTGCCTGCCCTGAGCCAGTGTTCCCAGCTCACCAGGGTCAACTTCTATGACAATGACATCTCCATGGCTGTTCTAAAGGACCTTCTGTATCACACAGCCAGTCTGAGCCAGCTGACCCAGGAGCTGTATCCTGCCCCTCTGGAGTGCTATGATGACACGGGTGATGTCCTTATGGGAAGATTTGTCCAACTTTGTCCTGAGCTTATGGAGACACTCATTACTGTAAGGCAGCCCAAGAATGTCTCCTTTGCTACGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046862-'1-9,'1-6,11-9=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGATCTTGCAGGCTGTG
R:
AGAAGTTGACCCTGGTGAGCT
Band lengths:
352-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types