HsaEX6028564 @ hg19
Exon Skipping
Gene
ENSG00000116726 | PRAMEF12
Description
PRAME family member 12 [Source:HGNC Symbol;Acc:22125]
Coordinates
chr1:12834984-12838049:+
Coord C1 exon
chr1:12834984-12835297
Coord A exon
chr1:12835686-12836261
Coord C2 exon
chr1:12837154-12838049
Length
576 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTTTTACCCACAGGCG
3' ss Score
12.22
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GATGTTTTTTTCTCTAGATTCATCAGGATGAGCCTCCAGGCCCCACCTAGACTCCTGGAGCTGGCTGAGCAGAGTCTGCTGAGAGACCGGGCCTTGGCCATCCCCACCCTGGAGGAGCTGCCCAGGGAGCTCTTTCCCCCACTGTTCATGGAGGCCTTTACCAGGAGATGCTGCGAGACCCTGACAACTATGGTGCAGGCCTGGCCCTTCACCTGCCTTCCTCTAGGGTCCCTGATGAAGTCATGTAATCTAGAGATCTTTCGAGCTGTGCTGGAGGGGCTTGATGCACTGCTTGCCCAGAAGGTTCGCCCCAG
Seq A exon
GCGGTGGAAACTTCAAGTGTTGGACTTGCGGAATGTGGATGAGAACTTCTGGGGCATATGGTCTGGAGCTTCTGCACTCTCCCCAGAGGCCCTGAGTAAGAGACGAACAGCAGGGAACTGTCCAAGGCCGGGTGGGCAGCAGCCCTTGATGGTGATCCTAGACCTTTGCTTCAAGAATGGGATGCTGGATGAATGCCTCACCCACTTCTTAGAGTGGGGCAAGCAGAGAAAAGGCTTACTGCACGTGTGTTGCAAGGAGCTGCAGATTTTTGGAATAGCCATCCACAGGATCATAGAGGTCCTGAACACGGTGGAGCTAGACTGTATCCAGGAGGTGGAAGTGTGCTGCCCGTGGGAGCTGTCCATTCTTATAAGGTTCGCCCCTTACCTGGGCCAGATGAGGAATCTCCGCAAACTTGTTCTCTTCAACATCCATGTCTCTGCCTGCATTCCCCTAGACAGGAAGGAGCAGTTTGTCATCCAGTTCACCTCTCAGTTCCTCAAGCTGGACTACTTCCAGAAGCTTTACATGCACTCTGTCTCTTTCCTCGAAGGCCACCTGGACCAGCTGCTCAG
Seq C2 exon
GTGTCTCCAGGCCCCCTTGGAGACAGTCGTAATGACCGAATGCCTGCTGTCAGAGTCGGACCTGAAGCATCTCTCTTGGTGCCCGAGCATCCGTCAGCTAAAAGAGCTAGACCTGAGGGGCATCACACTGACCCATTTCAGTCCTGAGCCCCTCTCAGTTCTGCTGGAGCAAGCTGAGGCCACCCTGCAGACCCTGGACTTAGAGGACTGTGGGATCGTGGATTCCCAACTCAGCGCCATCCTGCCTGCCCTGAGCCGCTGCTCCCAGCTCAGCACCTTCAGCTTCTGTGGGAACCTCATCTCCATGGCCGCCCTGGAGAACCTGCTGCGCCACACCGTCGGGCTGAGCAAGCTAAGCCTGGAGCTGTATCCTGCCCCTCTGGAGAGTTATGATGCCCAGGGTGCTCTCTGCTGGGGAAGATTTTCTCAACTTGGGGCTGAGCTGATGAAGACACTGAGGGACTTAAGGCAGCCCAAGATTATTGTGTTCAGCACTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116726-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127992=LRR_4=WD(100=25.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGGATGAGCCTCCAGG
R:
GCAGGCATTCGGTCATTACGA
Band lengths:
342-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)