HsaEX6028564 @ hg38
Exon Skipping
Gene
ENSG00000116726 | PRAMEF12
Description
PRAME family member 12 [Source:HGNC Symbol;Acc:HGNC:22125]
Coordinates
chr1:12774841-12777906:+
Coord C1 exon
chr1:12774841-12775154
Coord A exon
chr1:12775543-12776118
Coord C2 exon
chr1:12777011-12777906
Length
576 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTTTTACCCACAGGCG
3' ss Score
12.22
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GATGTTTTTTTCTCTAGATTCATCAGGATGAGCCTCCAGGCCCCACCTAGACTCCTGGAGCTGGCTGAGCAGAGTCTGCTGAGAGACCGGGCCTTGGCCATCCCCACCCTGGAGGAGCTGCCCAGGGAGCTCTTTCCCCCACTGTTCATGGAGGCCTTTACCAGGAGATGCTGCGAGACCCTGACAACTATGGTGCAGGCCTGGCCCTTCACCTGCCTTCCTCTAGGGTCCCTGATGAAGTCATGTAATCTAGAGATCTTTCGAGCTGTGCTGGAGGGGCTTGATGCACTGCTTGCCCAGAAGGTTCGCCCCAG
Seq A exon
GCGGTGGAAACTTCAAGTGTTGGACTTGCGGAATGTGGATGAGAACTTCTGGGGCATATGGTCTGGAGCTTCTGCACTCTCCCCAGAGGCCCTGAGTAAGAGACGAACAGCAGGGAACTGTCCAAGGCCGGGTGGGCAGCAGCCCTTGATGGTGATCCTAGACCTTTGCTTCAAGAATGGGACGCTGGATGAATGCCTCACCCACTTCTTAGAGTGGGGCAAGCAGAGAAAAGGCTTACTGCACGTGTGTTGCAAGGAGCTGCAGATTTTTGGAATAGCCATCCACAGGATCATAGAGGTCCTGAACACGGTGGAGCTAGACTGTATCCAGGAGGTGGAAGTGTGCTGCCCGTGGGAGCTGTCCATTCTTATAAGGTTCGCCCCTTACCTGGGCCAGATGAGGAATCTCCGCAAACTTGTTCTCTTCAACATCCATGTCTCTGCCTGCATTCCCCTAGACAGGAAGGAGCAGTTTGTCATCCAGTTCACCTCTCAGTTCCTCAAGCTGGACTACTTCCAGAAGCTTTACATGCACTCTGTCTCTTTCCTCGAAGGCCACCTGGACCAGCTGCTCAG
Seq C2 exon
GTGTCTCCAGGCCCCCTTGGAGACAGTCGTAATGACCGAATGCCTGCTGTCAGAGTCGGACCTGAAGCATCTCTCTTGGTGCCCGAGCATCCGTCAGCTAAAAGAGCTAGACCTGAGGGGCATCACACTGACCCATTTCAGTCCTGAGCCCCTCTCAGTTCTGCTGGAGCAAGCTGAGGCCACCCTGCAGACCCTGGACTTAGAGGACTGTGGGATCGTGGATTCCCAACTCAGCGCCATCCTGCCTGCCCTGAGCCGCTGCTCCCAGCTCAGCACCTTCAGCTTCTGTGGGAACCTCATCTCCATGGCCGCCCTGGAGAACCTGCTGCGCCACACCGTCGGGCTGAGCAAGCTAAGCCTGGAGCTGTATCCTGCCCCTCTGGAGAGTTATGATGCCCAGGGTGCTCTCTGCTGGGGAAGATTTTCTCAACTTGGGGCTGAGCTGATGAAGACACTGAGGGACTTAAGGCAGCCCAAGATAATTGTGTTCAGCACTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116726-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGGATGAGCCTCCAGG
R:
GCAGGCATTCGGTCATTACGA
Band lengths:
342-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains