RnoEX6024348 @ rn6
Exon Skipping
Gene
ENSRNOG00000042820 | Pramef17
Description
PRAME family member 17 [Source:RGD Symbol;Acc:1587447]
Coordinates
chr5:162440224-162442968:-
Coord C1 exon
chr5:162442682-162442968
Coord A exon
chr5:162441550-162442116
Coord C2 exon
chr5:162440224-162440788
Length
567 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTATTTTATCTATAGGAT
3' ss Score
10.28
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGACCTGAAAGCCCCACCCACACTCCTGCAGCTGGCTGCACAGAGCACGGTAAAGAAGGAGGTGCTGACCATCTCTGTTCTGGAGTACCTACCAAGGGAGCTCTTCCCAACGCTGTTCAAGGAGGCCGACACTCAGAGAAAAGCAAAGATGATTAAGATCCTGGTGGAATACTGGCCCTACCCTTGCCTTCTTGTTAGGTTGCTGATAGATAAACCCAACTTGGAGATCTTCCAGGCTATACTGGATGGAGTTGGCACATGGCTGAAACGGAAATATCGCCCCAG
Seq A exon
GATGGGGAAGCTTGAAGTGGTTGATTTGAGGAATGGACACCTTGACTCCTGGGATTTGCAGGCTGGAAGAGAGGGTGGAGGAGCCCAATCAGAAACTGTGCCTGAGAAGCAAGTAATGGAGGGCCACTCAAACAGGCGGCGTTTGAGGGTGTTCTGTGACCTTTCCTTTAAGTCTTCTAAGCATGAAGATAAACACCAAACACATCTGTTGCGGTGGGCAAAGGACAGAGAGGATTTCCTGCATCTGTGCTGTAAGAAGTTAGAGATTGGAGCATTAGAAGTGTCCAAGGTCAAGAAGGAGTTAAAATTTTTACAGCCAGAGTTCATCAAGGAGTTGGAACTGAATACAGTGGGGAATCTGTCCAAATTGGCAAAACTTGTACCTTGCATCAGCAAGATGAGAAATCTTCACAAACTCATGCTAGTACGCATCTTTGAAAGGACCTATACACCCTCAGAGAAAAACGTCTCCAAGATCATTTCTCTGTTCCCTGAACTCAGGTATCTCCAGAATCTCACTATTGGTGATGTCTATTTTCTTAAAGACCACATGAATGAGTTACTCAG
Seq C2 exon
GTGTCTGGTGGCTCCCTTGGTGTCCCTGACTATCACTCTCTGCCAGATCTCTCAGTCAGATTTGGAGTCATTTGCCCAGCGTTGGAACTATGGTCAGCTTAAACATCTGTGTTTGAAAGGTGTCTCTTTAACTGCATTGAATGTCACGCCTCTCAAATTTTTCTTAGAGAGTGTTGCAAACACTCTGCAGACTCTAGAATTAGAAGGCTGTAGGATGAGTGACTCTCACCTCAGTATCCTTCAGCCTGCCCTGACCCAATGCACCCAGCTCACTAGTTTCAATTTTTATGACAATAACATCTCCATGGATGCTCTGAAGGACCTTCTGCGTCACACTGTCAAACTGAGCCAGCTGACCATGGAACTGTACCCTGCTCCAGTAGAGGTCTATAATGAGTGGGGTTATGTTCAGGTAGAGACATTTTCTCAGCTTTGTGCTGAGCTCATGGACACACTCGTGGCTGTAAGGCAGCCCAAGTCAATCTGCTTTGGTACCTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042820-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.084 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACGGAAATATCGCCCCA
R:
GTGACGCAGAAGGTCCTTCAG
Band lengths:
356-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]