BtaEX0028674 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101635300-101636419:+
Coord C1 exon
chr11:101635300-101635397
Coord A exon
chr11:101635669-101635729
Coord C2 exon
chr11:101636292-101636419
Length
61 bp
Sequences
Splice sites
3' ss Seq
GAATTCTCTTTGGTAATCAGGTA
3' ss Score
5.19
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
GCAGCCACCTGCCACCTCTCTACCTGGATGGCCATGTGTTTGCAAGTCAGCCCCGACTGGTTCCTCAGACCATACCTCAGCAGCAGAGTTTCCAACAG
Seq A exon
GTATCCTTCTGATGAAGAGAAGAAAGGCCTAGACTCCCAGGCATGGATGCGTTAGAAAGAG
Seq C2 exon
GCTGCCGCTGCCCAGCAAATCCCAATTTCCCTTCACACGTCTCTACAAGCTCAAGCCCAGCTGGGACTGAGGGGCGGGCTGCCCGTCTCCCAGTCTCAGGAGATCTTCAGCTCCTTACAGCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.333 C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000010939fB5541
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCTGGATGGCCATGTGT
R:
GCTGGGCTTGAGCTTGTAGAG
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development