HsaEX0007676 @ hg19
Exon Skipping
Gene
ENSG00000130723 | BAT2L
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:28121]
Coordinates
chr9:134361472-134362681:+
Coord C1 exon
chr9:134361472-134361569
Coord A exon
chr9:134361868-134361928
Coord C2 exon
chr9:134362554-134362681
Length
61 bp
Sequences
Splice sites
3' ss Seq
GAATTTTCTTTGGTGATCAGGTA
3' ss Score
5.22
5' ss Seq
GAGGTAGTC
5' ss Score
4.52
Exon sequences
Seq C1 exon
GCAGCCACCTCCCGCCCCTGTACCTGGATGGCCATGTGTTTGCAAGTCAGCCCCGGCTGGTTCCTCAAACGATACCTCAGCAGCAGAGTTACCAACAG
Seq A exon
GTATCCTTCTGATGAAGAGAAGAAAGGCCTAAACTCCCAGGCATGGATGCATTAGAAAGAG
Seq C2 exon
GCCGCCGCTGCCCAGCAGATCCCGATCTCCCTTCACACATCTCTGCAGGCACAAGCTCAGCTTGGACTGAGGGGTGGGCTTCCTGTGTCCCAGTCCCAGGAGATCTTCAGCTCCTTGCAGCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.333 C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGATGGCCATGTGTTTG
R:
CTTGTGCCTGCAGAGATGTGT
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)