BtaEX0028704 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27493597-27494617:-
Coord C1 exon
chr25:27494380-27494617
Coord A exon
chr25:27494126-27494267
Coord C2 exon
chr25:27493597-27493862
Length
142 bp
Sequences
Splice sites
3' ss Seq
GGGTCATCTCCTCTCCCTAGCCT
3' ss Score
6.79
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AACTACTCTCATTGGAGCCTGCTGTGCCGGGAAGAGGGGACCTGGTTCTTGGCTGGAATCAGAGACTTGCCCAGTGACTGCCTGCGTCCCAGAGTTTTCTACCCACTGCAGACCCACGGTCCATGGATCAGCCATGTGACTCGGGGGGCCTACCTGGAGGATCAGCTGGCCTGGGACTGGGGACCTGAGGGGGAGGAGACTGAGGCACAAACCTGTCCCCCTCACACAGAGAATGGTG
Seq A exon
CCTGTGGCTTGCAGCCAGAGCCGGCTCCGATGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCATGTAGCCGGAGAGCGAGTCTGCGCTGGCGTCCTCGTGGCCCCAGGCTGGGTCCTGGCAGCCACTCACTGTGTCCTCAG
Seq C2 exon
GCCGGGCTCTACAACGGTGCCTTATATTGAAGTGTACCTGGGCCGGGCGGGGGCCAGCCCCCTCCCCCAGAGCCACCAGGTGTCCCGGTTGGTCATCAGCATCCACTTGCCCCGGCATCTGGGACTGCGGCCCCCCCTGGCCCTCCTGGAGCTGAGCTCCCGAGTGGAGCCCTCCCCATCGGCCTTGCCCATCTGCCTTCACCCTGGGGGTACCCCCCTGGGGGCCAGTTGCTGGGTACTGGGCTGGAAGGACCCCCAGGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.5=85.4)
C2:
PF0008921=Trypsin=FE(44.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTACCCACTGCAGACCCA
R:
GCAAGTGGATGCTGATGACCA
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development