RnoEX0070349 @ rn6
Exon Skipping
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199380093-199390395:-
Coord C1 exon
chr1:199390229-199390395
Coord A exon
chr1:199380858-199380999
Coord C2 exon
chr1:199380093-199380214
Length
142 bp
Sequences
Splice sites
3' ss Seq
TACCTACCTCCTCTCTCCAGCCT
3' ss Score
7.83
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACCCTCTGCCTGTCCCCTGGGTTCTACAGGAAGTAGAGCTAAAGTTGCTGGGAGAGACTGCCTGTCAATGTCTCTACAGTCGGCCTGGCCCTTTCAACCTGACTTTGCAGCTGTTGCCAGGAATGCTGTGTGCTGGCTATCCAGAGGGACGAAGGGACACCTGCCAG
Seq A exon
CCTGTGGCCTGAGGCCACAATCCACTCCAGCTGGTGTGCTGTGGCCCTGGCTGACGGAGGTGCATGTGACTGGTGATAGAGTCTGCACAGGGATTCTGGTGGCCCCAGGCTGGGTGCTAGCAGCCACTCACTGTATTCTCAG
Seq C2 exon
TTCCTGTAGCTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCAGGGCGCTCTGACTCCTGGAACCTTCTGTGTCTTCTATACTGAAGAGCAAGAGGATAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343_MULTIEX1-7/9=C1-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
PF0008921=Trypsin=PU(20.6=85.4)
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
ENSRNOT00000026587fB11469
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCCCCTGGGTTCTACAG
R:
GAAGGTTCCAGGAGTCAGAGC
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]