RnoINT0118730 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199380093-199380554:-
Coord C1 exon
chr1:199380289-199380554
Coord A exon
chr1:199380215-199380288
Coord C2 exon
chr1:199380093-199380214
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CAGCTTTCTCTCCTCTTTAGTTC
3' ss Score
7.92
Exon sequences
Seq C1 exon
GCTGGGCTCCTCAACAGTGCCTTACATTGACGTATATCTGGGCCTGGCAGGGGTCAGCTCCCTCCCTCAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTTCCTCGGCATTCTGGACTTAGACCCCCCCTGGCCCTGCTGGAGCTGAATTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGAGGGTGTTCCCCCAGGGGCCAGCTGCTGGGTTCTGGGCTGGAAGGACCCACAGAACAGAG
Seq A exon
GTGAGAGCCCCTGGGTCATAGGAATAAGGAATAACCTCAGGCCAGAACCTTTGACAGCTTTCTCTCCTCTTTAG
Seq C2 exon
TTCCTGTAGCTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCAGGGCGCTCTGACTCCTGGAACCTTCTGTGTCTTCTATACTGAAGAGCAAGAGGATAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(44.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAGCTGAATTCTCGG
R:
AGTGACAGAGTCGTGGTGTCA
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]