RnoEX0070348 @ rn6
Exon Skipping
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199380093-199390395:-
Coord C1 exon
chr1:199390229-199390395
Coord A exon
chr1:199381113-199381350
Coord C2 exon
chr1:199380093-199380214
Length
238 bp
Sequences
Splice sites
3' ss Seq
ATAATACTGTTTTGCTGCAGAAA
3' ss Score
8.49
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ACCCTCTGCCTGTCCCCTGGGTTCTACAGGAAGTAGAGCTAAAGTTGCTGGGAGAGACTGCCTGTCAATGTCTCTACAGTCGGCCTGGCCCTTTCAACCTGACTTTGCAGCTGTTGCCAGGAATGCTGTGTGCTGGCTATCCAGAGGGACGAAGGGACACCTGCCAG
Seq A exon
AAAGATTCTGGTTGGAGCCTTCTGTGTCGTGAGGAGGGGACGTGGTTCCTGGCTGGATACAGAACCCTCTCAAATGGTTGTCTCCGACCCCGAGCCTTTTCCCCAATGCAGACTCATGGGCTATGGATCAGTCATGTGACTCAGGGAGCTTACCTGGAGGACCAGCTAACCTGGGACTGGGGCCCTGAAGGAGAGGAGACTGAGAAACAGACATGTCCCCCACACACTGAGCATGGTG
Seq C2 exon
TTCCTGTAGCTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCAGGGCGCTCTGACTCCTGGAACCTTCTGTGTCTTCTATACTGAAGAGCAAGAGGATAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343_MULTIEX1-6/9=C1-9
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.238 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
PF0008921=Trypsin=PD(18.6=51.9)
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
ENSRNOT00000026587fB11469
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCTGTCCCCTGGG
R:
CACATCTATCCTCTTGCTCTTCAGT
Band lengths:
284-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]