RnoINT0118726 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199382246-199382736:-
Coord C1 exon
chr1:199382498-199382736
Coord A exon
chr1:199382410-199382497
Coord C2 exon
chr1:199382246-199382409
Length
88 bp
Sequences
Splice sites
5' ss Seq
GGGGTGCGC
5' ss Score
3.75
3' ss Seq
ACCCCTGGCCGCTCTTTCAGAAC
3' ss Score
9.31
Exon sequences
Seq C1 exon
CTCTCTCCACGATTTCGAGACCTGGCGGGTGCTGCTGCCCTCGCGTCCGGAGGAGAAGAGGGTCGTGCGCCTCGTGGCGCACGAGAACGCTTCCAGGAACTTCGCTTCAGACCTGGCGCTACTGCAGCTGAGGACGCGCGTGAACCTGACTGCGGCTCCGAGTGCTGTGTGCCTGCCCCACCGCGAACACTATTTTCTGCCCGGGAGCCGCTGCCGCCTAGCTCGCTGGGGACACGGGG
Seq A exon
GTGCGCGAGACCGTGCGGGGGCGCACACTGGGCGGAGTGGGCGGAGCGGAAACCACGCGGCCTAAGCAACCCCTGGCCGCTCTTTCAG
Seq C2 exon
AACCTGCACCACGCTCCAGCGCGCAGCTGGAGGCGCAGCTGTTGAACAGCTGGTGGTGTCACTGCCTGTACGGCCGCCAGGGGGAGTCCGTGCCGCCGCCAGGAGACCCGCCGCACTTGCTTTGCCCCGCCTACCAGGAGGAGGAAGAGGCGGGTGCTTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.180
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(24.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGCAGCTGAGGACGC
R:
GACACCACCAGCTGTTCAACA
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]