MmuINT0127481 @ mm10
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127935502-127936003:-
Coord C1 exon
chr7:127935765-127936003
Coord A exon
chr7:127935666-127935764
Coord C2 exon
chr7:127935502-127935665
Length
99 bp
Sequences
Splice sites
5' ss Seq
GGGGTGCGC
5' ss Score
3.75
3' ss Seq
GCTGCTCATCTCTCTCCCAGAAC
3' ss Score
8.63
Exon sequences
Seq C1 exon
CTCACCCCACGATTTTGAGACCTGGCGGGTGCTGCTGCCCTCCCGTCCGGAGGAGGAGAGGGTGGCGCGCCTCGTGGCGCACGAGAACGCTTCCAGGGACTTCGCTTCGGACCTGGCGCTGCTGCAGCTGAGGACGCGCGTGAACCTGACCGCGGCCCCGAGTGCCGTGTGCCTGCCCCACCACGAACACTATTTTCTGCCCGGGAGCCACTGCCGCCTGGCTCGCTGGGGACGCGGGG
Seq A exon
GTGCGCGTGGCCGCGCGGGGCCAAGGACTGGGTGGGATGGGCGGAGCGGAACCCACGCGGGCGGCCGCATTGACCCCTCGCTGCTCATCTCTCTCCCAG
Seq C2 exon
AACTCGCCCCGGGCTCCAGCGCGCAGCTGGAGGCGCAGCTGTTGAACGGCTGGTGGTGTCATTGCCTGTACGGCCGCCAGGGGGAGACCGTGCCGCGGCCAGGAGACCCGCCGCACTTGCTTTGTCCCGCCTACCAGGAGGAGGAAGAGGCGGGCCTATGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371:ENSMUST00000118755:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTTCTGCCCGGGAGCCA
R:
GTAGGCGGGACAAAGCAAGTG
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types