HsaINT1028219 @ hg38
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31142481-31142993:-
Coord C1 exon
chr16:31142737-31142993
Coord A exon
chr16:31142645-31142736
Coord C2 exon
chr16:31142481-31142644
Length
92 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
CCCTGCCTTTTCCCTTCCAGAAC
3' ss Score
12.82
Exon sequences
Seq C1 exon
CCCGAACAGCTCCGACAGCCCACCCCGCGACCTCGACGCCTGGCGCGTGCTGCTGCCCTCGCGCCCGCGCGCGGAGCGGGTGGCGCGCCTGGTGCAGCACGAGAACGCTTCGTGGGACAACGCCTCGGACCTGGCGCTGCTGCAGCTGCGCACGCCCGTGAACCTGAGCGCGGCTTCGCGGCCCGTGTGCCTACCCCACCCGGAACACTACTTCCTGCCCGGGAGCCGCTGCCGCCTGGCCCGCTGGGGCCGCGGGG
Seq A exon
GTGAGCTGGGGACCGGCGCTGGGCCGGGCGGCACCGGGCGGTGCAGGGGCCGTCTGGGCCGCAGCGCGGGCTCCCTGCCTTTTCCCTTCCAG
Seq C2 exon
AACCCGCGCTTGGCCCAGGCGCGCTGCTGGAGGCGGAGCTGTTAGGCGGCTGGTGGTGCCACTGCCTGTACGGCCGCCAGGGGGCGGCAGTACCGCTGCCCGGAGACCCGCCGCACGCGCTCTGCCCTGCCTACCAGGAAAAGGAGGAGGTGGGCAGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226:ENST00000268281:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(24.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCGGAACACTACTTCCT
R:
GTCTCCGGGCAGCGGTAC
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains