MmuEX0037449 @ mm10
Exon Skipping
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127935502-127936838:-
Coord C1 exon
chr7:127936589-127936838
Coord A exon
chr7:127935765-127936003
Coord C2 exon
chr7:127935502-127935665
Length
239 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCGCACCTCTGACAGCTC
3' ss Score
5.2
5' ss Seq
GGGGTGCGC
5' ss Score
3.75
Exon sequences
Seq C1 exon
GGTGACTCTGGGGGACCGCTGGTCTGTGAGGACGGAGGCCGATGGTTCCTGGCCGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCCCTATGAGTCGTGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGTCTTTCCCAGCCAGCTCCAGAAGCCACAGTCAGGACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCTCAACCAG
Seq A exon
CTCACCCCACGATTTTGAGACCTGGCGGGTGCTGCTGCCCTCCCGTCCGGAGGAGGAGAGGGTGGCGCGCCTCGTGGCGCACGAGAACGCTTCCAGGGACTTCGCTTCGGACCTGGCGCTGCTGCAGCTGAGGACGCGCGTGAACCTGACCGCGGCCCCGAGTGCCGTGTGCCTGCCCCACCACGAACACTATTTTCTGCCCGGGAGCCACTGCCGCCTGGCTCGCTGGGGACGCGGGG
Seq C2 exon
AACTCGCCCCGGGCTCCAGCGCGCAGCTGGAGGCGCAGCTGTTGAACGGCTGGTGGTGTCATTGCCTGTACGGCCGCCAGGGGGAGACCGTGCCGCGGCCAGGAGACCCGCCGCACTTGCTTTGTCCCGCCTACCAGGAGGAGGAAGAGGCGGGCCTATGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.333 A=0.078 C2=0.109
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
A:
PF0008921=Trypsin=FE(36.2=100)
C2:
PF0008921=Trypsin=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTGCAGTGGCTCCCTAT
R:
CTCTTCCTCCTCCTGGTAGGC
Band lengths:
294-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types