HsaEX6043368 @ hg19
Exon Skipping
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31153802-31154792:-
Coord C1 exon
chr16:31154663-31154792
Coord A exon
chr16:31154058-31154314
Coord C2 exon
chr16:31153802-31153965
Length
257 bp
Sequences
Splice sites
3' ss Seq
CCTCGGCCCCCATCCCGCAGCCC
3' ss Score
9.4
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
AGTGCGGGAAGGCCCCGCGGCCAGGGGCCTGGCCCTGGGAGGCCCAGGTGATGGTGCCAGGATCCAGACCCTGCCATGGGGCGCTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGCTGCTTTCTGGA
Seq A exon
CCCGAACAGCTCCGACAGCCCACCCCGCGACCTCGACGCCTGGCGCGTGCTGCTGCCCTCGCGCCCGCGCGCGGAGCGGGTGGCGCGCCTGGTGCAGCACGAGAACGCTTCGTGGGACAACGCCTCGGACCTGGCGCTGCTGCAGCTGCGCACGCCCGTGAACCTGAGCGCGGCTTCGCGGCCCGTGTGCCTACCCCACCCGGAACACTACTTCCTGCCCGGGAGCCGCTGCCGCCTGGCCCGCTGGGGCCGCGGGG
Seq C2 exon
AACCCGCGCTTGGCCCAGGCGCGCTGCTGGAGGCGGAGCTGTTAGGCGGCTGGTGGTGCCACTGCCTGTACGGCCGCCAGGGGGCGGCAGTACCGCTGCCCGGAGACCCGCCGCACGCGCTCTGCCCTGCCTACCAGGAAAAGGAGGAGGTGGGCAGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.4=97.7)
A:
PF0008921=Trypsin=FE(38.7=100)
C2:
PF0008921=Trypsin=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGATGGTGCCAGGATC
R:
CTGCCCACCTCCTCCTTTTC
Band lengths:
244-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)