BtaEX6109901 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27494880-27495861:-
Coord C1 exon
chr25:27495732-27495861
Coord A exon
chr25:27495130-27495386
Coord C2 exon
chr25:27494880-27495043
Length
257 bp
Sequences
Splice sites
3' ss Seq
CCAGTCTCCCCATCTCGCAGTCA
3' ss Score
7.15
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
AGTGTGGAAGAGCCCCAAGGCCAGGGGCCTGGCCCTGGGAAGCCCAGGTGATGGTCCCAGGATCCAGACCCTGCTATGGGGCACTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGTTGCTTTCCAGG
Seq A exon
TCACATCAGCTCAGCGCGCCCGCCCAGCGACCTGGACTACTGGCGCGTGCAACTGCCCTCGCGCCCGCGCGCGGAGCAGGTGGCGCGCCTCGTGCCGCACGAGAACGCCTCGTGGGACGACGCCTCGAACCTGGCGCTGCTGCAGCTGCGTGCGCCCGTGAACCTGAGCGCGGCCCCGCGGCCAGTGTGTCTACCCCACCCAGAACACTATTTCCTGCCAGGGAGCCGCTGCCGCCTGGCTCGCTGGGGCCGCGGGG
Seq C2 exon
AACCCGCGCCCGGAGCCAGCTCGCTGCTTGAGGCGGAGCTGTTGAGCGCCTGGTGGTGTCACTGCCTGTACGGCCGCCAGGGGGCGTCAGTGCCGCCGCCAGGAGAGCCTCCGCAGGCGCTCTGCCCCGCCTACCAGGAGGAGGAGGCGGAGGGGAGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.103 C2=0.200
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(29.7=97.7)
A:
PF0008921=Trypsin=FE(59.3=100)
C2:
PF0008921=Trypsin=PD(10.3=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGGAAGAGCCCCAAGG
R:
CTCCTCCTCCTGGTAGGCG
Band lengths:
276-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]