Special

MmuEX0037449 @ mm9

Exon Skipping

Gene
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135079016-135080352:-
Coord C1 exon
chr7:135080103-135080352
Coord A exon
chr7:135079279-135079517
Coord C2 exon
chr7:135079016-135079179
Length
239 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCGCACCTCTGACAGCTC
3' ss Score
5.2
5' ss Seq
GGGGTGCGC
5' ss Score
3.75
Exon sequences
Seq C1 exon
GGTGACTCTGGGGGACCGCTGGTCTGTGAGGACGGAGGCCGATGGTTCCTGGCCGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCCCTATGAGTCGTGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGTCTTTCCCAGCCAGCTCCAGAAGCCACAGTCAGGACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCTCAACCAG
Seq A exon
CTCACCCCACGATTTTGAGACCTGGCGGGTGCTGCTGCCCTCCCGTCCGGAGGAGGAGAGGGTGGCGCGCCTCGTGGCGCACGAGAACGCTTCCAGGGACTTCGCTTCGGACCTGGCGCTGCTGCAGCTGAGGACGCGCGTGAACCTGACCGCGGCCCCGAGTGCCGTGTGCCTGCCCCACCACGAACACTATTTTCTGCCCGGGAGCCACTGCCGCCTGGCTCGCTGGGGACGCGGGG
Seq C2 exon
AACTCGCCCCGGGCTCCAGCGCGCAGCTGGAGGCGCAGCTGTTGAACGGCTGGTGGTGTCATTGCCTGTACGGCCGCCAGGGGGAGACCGTGCCGCGGCCAGGAGACCCGCCGCACTTGCTTTGTCCCGCCTACCAGGAGGAGGAAGAGGCGGGCCTATGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

Show structural model
Features
Disorder rate (Iupred):
  C1=0.333 A=0.109 C2=0.109
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
A:
PF0008921=Trypsin=FE(36.2=100)
C2:
PF0008921=Trypsin=FE(23.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTGCAGTGGCTCCCTAT
R:
CTCTTCCTCCTCCTGGTAGGC
Band lengths:
294-533
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types