Special

MmuEX0037444 @ mm9

Exon Skipping

Gene
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135079016-135084717:-
Coord C1 exon
chr7:135084551-135084717
Coord A exon
chr7:135080103-135080352
Coord C2 exon
chr7:135079016-135079179
Length
250 bp
Sequences
Splice sites
3' ss Seq
CTTGAGTCATCTATCATTAGGGT
3' ss Score
3.85
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
TCCCTCTGCCTCTGCCCTGGGTTCTACAGGAAGTGGAGCTAAGGTTGCTGGGAGAGGCTGCCTGTCAATGTCTCTACAGCCGTCCTGGCCCTTTCAACCTGACTTTCCAGCTGTTGCCAGGGATGTTGTGTGCTGGCTATCCAGCGGGACGAAGGGATACCTGCCAG
Seq A exon
GGTGACTCTGGGGGACCGCTGGTCTGTGAGGACGGAGGCCGATGGTTCCTGGCCGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCCCTATGAGTCGTGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGTCTTTCCCAGCCAGCTCCAGAAGCCACAGTCAGGACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCTCAACCAG
Seq C2 exon
AACTCGCCCCGGGCTCCAGCGCGCAGCTGGAGGCGCAGCTGTTGAACGGCTGGTGGTGTCATTGCCTGTACGGCCGCCAGGGGGAGACCGTGCCGCGGCCAGGAGACCCGCCGCACTTGCTTTGTCCCGCCTACCAGGAGGAGGAAGAGGCGGGCCTATGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-'5-10,'5-5,6-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.333 C2=0.109
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=FE(22.9=100)
A:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
C2:
PF0008921=Trypsin=FE(23.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGCCCTGGGTTCTACAG
R:
CTCTTCCTCCTCCTGGTAGGC
Band lengths:
308-558
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types