BtaEX0028703 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27495732-27498896:-
Coord C1 exon
chr25:27498730-27498896
Coord A exon
chr25:27495971-27496220
Coord C2 exon
chr25:27495732-27495861
Length
250 bp
Sequences
Splice sites
3' ss Seq
ACTGAGTCATCTGTCATCAGGGA
3' ss Score
4.39
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACCCCCTGCCTCTCCCCTGGGTGCTACAAGAAGTAGAGCTGAGGTTGCTGGGAGAGGCTGCCTGTCAGTGTCTCTACAGCCGCCCTGGCCCCTTCAATCTCACTTTCCAGCTATTGCCGGGGATGCTATGTGCCGGCTACCGGGAAGGCCGCAGGGACACCTGCCAG
Seq A exon
GGAGACTCTGGGGGACCCCTGGTCTGCAAGGAAGGTGGTCGATGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCCGGAGTCTTCACTGCTGTGGCTCCCTATGAGGCATGGATAAGGGAACAGGTGTCAGGCTCAGAGCCTGGGCCTGCCTTCCCCACCCAGTCCCCGGAGGCCCAGTCAGGCCTCCCCGAGCCCATGAATGAGAATTGCACCATTGCCCTGCCAG
Seq C2 exon
AGTGTGGAAGAGCCCCAAGGCCAGGGGCCTGGCCCTGGGAAGCCCAGGTGATGGTCCCAGGATCCAGACCCTGCTATGGGGCACTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGTTGCTTTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.310 C2=0.045
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
C2:
PF0008921=Trypsin=PU(29.7=97.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTCTCCCCTGGGTG
R:
CAGGTGCCAAGACCCAGCTT
Band lengths:
276-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development