HsaEX6043366 @ hg38
Exon Skipping
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31143342-31145955:-
Coord C1 exon
chr16:31145789-31145955
Coord A exon
chr16:31143588-31143837
Coord C2 exon
chr16:31143342-31143471
Length
250 bp
Sequences
Splice sites
3' ss Seq
ATGCAGTCATCTGCCACTAGGGT
3' ss Score
3.61
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCCTCTGCCTCTCCCCTGGGTGCTACAGGAAGTGGAGCTAAGGCTGCTGGGCGAGGCCACCTGTCAATGTCTCTACAGCCAGCCCGGTCCCTTCAACCTCACTCTCCAGATATTGCCAGGGATGCTGTGTGCTGGCTACCCAGAGGGCCGCAGGGACACCTGCCAG
Seq A exon
GGTGACTCTGGGGGGCCCCTGGTCTGTGAGGAAGGCGGCCGCTGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGAAACCGCCCTGGAGTTTTCACTGCTGTGGCTACCTATGAGGCATGGATACGGGAGCAGGTGATGGGTTCAGAGCCTGGGCCTGCCTTTCCCACCCAGCCCCAGAAGACCCAGTCAGATCCCCAGGAGCCCAGGGAGGAGAACTGCACCATTGCCCTGCCTG
Seq C2 exon
AGTGCGGGAAGGCCCCGCGGCCAGGGGCCTGGCCCTGGGAGGCCCAGGTGATGGTGCCAGGATCCAGACCCTGCCATGGGGCGCTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGCTGCTTTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.405 C2=0.068
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
C2:
PF0008921=Trypsin=PU(19.4=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCTGCCTCTCCCCTGG
R:
CCAGAAAGCAGCTGGCAGG
Band lengths:
296-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains