RnoEX0070344 @ rn6
Exon Skipping
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199380093-199390395:-
Coord C1 exon
chr1:199390229-199390395
Coord A exon
chr1:199383325-199383574
Coord C2 exon
chr1:199380093-199380214
Length
250 bp
Sequences
Splice sites
3' ss Seq
CTTGAGTCATCTATCATTAGGGT
3' ss Score
3.85
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
ACCCTCTGCCTGTCCCCTGGGTTCTACAGGAAGTAGAGCTAAAGTTGCTGGGAGAGACTGCCTGTCAATGTCTCTACAGTCGGCCTGGCCCTTTCAACCTGACTTTGCAGCTGTTGCCAGGAATGCTGTGTGCTGGCTATCCAGAGGGACGAAGGGACACCTGCCAG
Seq A exon
GGTGACTCTGGGGGACCGTTGGTCTGTGAGGATGGCGGCCGATGGTTCCTGGCGGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCACTATGAGTCATGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGCCTTTCCCAGCCAGCTCCAGAAGCCCCCGTCAGAACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCCCAACCAG
Seq C2 exon
TTCCTGTAGCTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCAGGGCGCTCTGACTCCTGGAACCTTCTGTGTCTTCTATACTGAAGAGCAAGAGGATAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343_MULTIEX1-2/9=C1-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.252 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCTGTCCCCTGGG
R:
CACATCTATCCTCTTGCTCTTCAGT
Band lengths:
284-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]