RnoINT0118737 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199383088-199383574:-
Coord C1 exon
chr1:199383325-199383574
Coord A exon
chr1:199383218-199383324
Coord C2 exon
chr1:199383088-199383217
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
3' ss Seq
CCAGGCCTCTCATCTCTTAGAGT
3' ss Score
7.33
Exon sequences
Seq C1 exon
GGTGACTCTGGGGGACCGTTGGTCTGTGAGGATGGCGGCCGATGGTTCCTGGCGGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCACTATGAGTCATGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGCCTTTCCCAGCCAGCTCCAGAAGCCCCCGTCAGAACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCCCAACCAG
Seq A exon
GTGCACTGACCCTGAGCTGAGCCGGGCTGGGTGGATACGAATTGGGGTGGAGGCTGCAGGGTTAAGGATTTCTGCAGCCCTTCTGACCCAGGCCTCTCATCTCTTAG
Seq C2 exon
AGTGCGGGAAGGCTACGAGGCCCGGGACCTGGCCCTGGGAGGCCCAGGTGATGGTGCCAGGCTCCACACCCTGCTATGGAGCTCTGGTGTCTGACAGCTGGGTCTTGGCACCCGCCAGCTGCTTTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.252 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
A:
NA
C2:
PF0008921=Trypsin=PU(19.5=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCACTGCAGTGGCTCAC
R:
CAAGACCCAGCTGTCAGACAC
Band lengths:
255-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]