BtaINT0118748 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27495732-27496220:-
Coord C1 exon
chr25:27495971-27496220
Coord A exon
chr25:27495862-27495970
Coord C2 exon
chr25:27495732-27495861
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCAGGCCTCTCACCCCTCAGAGT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GGAGACTCTGGGGGACCCCTGGTCTGCAAGGAAGGTGGTCGATGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCCGGAGTCTTCACTGCTGTGGCTCCCTATGAGGCATGGATAAGGGAACAGGTGTCAGGCTCAGAGCCTGGGCCTGCCTTCCCCACCCAGTCCCCGGAGGCCCAGTCAGGCCTCCCCGAGCCCATGAATGAGAATTGCACCATTGCCCTGCCAG
Seq A exon
GTGAGGAAGGCAGAACCCCTAGATGTCAGCTGGATCTGGGAGATTTGAGTTCAGGTGGAAACTGCCTGGGGTTCAGGAGGCCCTCTGACTCAGGCCTCTCACCCCTCAG
Seq C2 exon
AGTGTGGAAGAGCCCCAAGGCCAGGGGCCTGGCCCTGGGAAGCCCAGGTGATGGTCCCAGGATCCAGACCCTGCTATGGGGCACTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGTTGCTTTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397:ENSBTAT00000055283:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
A:
NA
C2:
PF0008921=Trypsin=PU(29.7=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTTCACTGCTGTGGCTC
R:
TTCAGACACCAGTGCCCCATA
Band lengths:
245-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]