HsaINT0132991 @ hg19
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31154663-31155158:-
Coord C1 exon
chr16:31154909-31155158
Coord A exon
chr16:31154793-31154908
Coord C2 exon
chr16:31154663-31154792
Length
116 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCAGGCCTCTCACCCCTCAGAGT
3' ss Score
7.66
Exon sequences
Seq C1 exon
GGTGACTCTGGGGGGCCCCTGGTCTGTGAGGAAGGCGGCCGCTGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGAAACCGCCCTGGAGTTTTCACTGCTGTGGCTACCTATGAGGCATGGATACGGGAGCAGGTGATGGGTTCAGAGCCTGGGCCTGCCTTTCCCACCCAGCCCCAGAAGACCCAGTCAGATCCCCAGGAGCCCAGGGAGGAGAACTGCACCATTGCCCTGCCTG
Seq A exon
GTGAGTGGGCGGCACCCCTGGATGTAAGCGGGACATGGGAGAGTGAGTTGGGATGGAGACTGCTGGGAGTGATTGGGTTGCAGGAGGCCCACTGACCCAGGCCTCTCACCCCTCAG
Seq C2 exon
AGTGCGGGAAGGCCCCGCGGCCAGGGGCCTGGCCCTGGGAGGCCCAGGTGATGGTGCCAGGATCCAGACCCTGCCATGGGGCGCTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGCTGCTTTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-PRSS36:NM_173502:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
A:
NA
C2:
PF0008921=Trypsin=PU(19.4=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTTTCACTGCTGTGGCT
R:
GACCCAGCTTTCAGACACCAG
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)