Special

MmuINT0127479 @ mm9

Intron Retention

Gene
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135079839-135080352:-
Coord C1 exon
chr7:135080103-135080352
Coord A exon
chr7:135079969-135080102
Coord C2 exon
chr7:135079839-135079968
Length
134 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
CAGGCCTCTCATCTCTTAAGAGT
3' ss Score
4.17
Exon sequences
Seq C1 exon
GGTGACTCTGGGGGACCGCTGGTCTGTGAGGACGGAGGCCGATGGTTCCTGGCCGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCCCTATGAGTCGTGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGTCTTTCCCAGCCAGCTCCAGAAGCCACAGTCAGGACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCTCAACCAG
Seq A exon
GTGAACGGCAGATGCACTGACACTGAGCTGAGCTGAGCTGGGCTGGGCTGGGCTGGGCAGATACGAATTGGGGTGGAGGCTGCAGGGTTAAGGATTTCTGCAGACTCCCTGACCCAGGCCTCTCATCTCTTAAG
Seq C2 exon
AGTGCGGGAAGGCTCCGAGGCCGGGGACCTGGCCCTGGGAGGCCCAAGTGACCGTACCAGGCTCCACACCCTGCTATGGAGCTCTGGTGTCTGACAGATGGGTCTTGGCACCCGCCAGCTGCTTTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-Prss36:NM_001081374:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.333 A=NA C2=0.170
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
A:
NA
C2:
PF0008921=Trypsin=PU(18.5=97.7)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCCTATGAGTCGTGGAT
R:
GTGCCAAGACCCATCTGTCAG
Band lengths:
245-379
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types