HsaINT1028217 @ hg38
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31143342-31143837:-
Coord C1 exon
chr16:31143588-31143837
Coord A exon
chr16:31143472-31143587
Coord C2 exon
chr16:31143342-31143471
Length
116 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCAGGCCTCTCACCCCTCAGAGT
3' ss Score
7.66
Exon sequences
Seq C1 exon
GGTGACTCTGGGGGGCCCCTGGTCTGTGAGGAAGGCGGCCGCTGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGAAACCGCCCTGGAGTTTTCACTGCTGTGGCTACCTATGAGGCATGGATACGGGAGCAGGTGATGGGTTCAGAGCCTGGGCCTGCCTTTCCCACCCAGCCCCAGAAGACCCAGTCAGATCCCCAGGAGCCCAGGGAGGAGAACTGCACCATTGCCCTGCCTG
Seq A exon
GTGAGTGGGCGGCACCCCTGGATGTAAGCGGGACATGGGAGAGTGAGTTGGGATGGAGACTGCTGGGAGTGATTGGGTTGCAGGAGGCCCACTGACCCAGGCCTCTCACCCCTCAG
Seq C2 exon
AGTGCGGGAAGGCCCCGCGGCCAGGGGCCTGGCCCTGGGAGGCCCAGGTGATGGTGCCAGGATCCAGACCCTGCCATGGGGCGCTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGCTGCTTTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226:ENST00000268281:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
A:
NA
C2:
PF0008921=Trypsin=PU(19.4=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTTTCACTGCTGTGGCT
R:
GACCCAGCTTTCAGACACCAG
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains