RnoINT0118729 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199380289-199380999:-
Coord C1 exon
chr1:199380858-199380999
Coord A exon
chr1:199380555-199380857
Coord C2 exon
chr1:199380289-199380554
Length
303 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GTTGGTTCCTATCCTCACAGGCT
3' ss Score
7.15
Exon sequences
Seq C1 exon
CCTGTGGCCTGAGGCCACAATCCACTCCAGCTGGTGTGCTGTGGCCCTGGCTGACGGAGGTGCATGTGACTGGTGATAGAGTCTGCACAGGGATTCTGGTGGCCCCAGGCTGGGTGCTAGCAGCCACTCACTGTATTCTCAG
Seq A exon
GTGGGTCTCTCCTAGCAAGGAGGCAAGGTGAGGAAAATTAGGTGATAGATGAAGGATTCTTTCAGTAGTAGGACAGCATCACGTGTGGGCTCACATAGCACAGGGAATCCAGTGCTGAGGGTGTTTTTGTTGGGATGCTTTGGTTTGGTTAGATTTGAAAACGCAGGAGAGAGAGGAATCACAGAGCAGTTGGTGGGTCGTCCTGGAGACCATTTCTGTCTGTCTTCTGCTGGGAAGTACTTCACCACCTACGATGTAAGCCAGGATGCTGGCTCTGACACTGGTTGGTTCCTATCCTCACAG
Seq C2 exon
GCTGGGCTCCTCAACAGTGCCTTACATTGACGTATATCTGGGCCTGGCAGGGGTCAGCTCCCTCCCTCAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTTCCTCGGCATTCTGGACTTAGACCCCCCCTGGCCCTGCTGGAGCTGAATTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGAGGGTGTTCCCCCAGGGGCCAGCTGCTGGGTTCTGGGCTGGAAGGACCCACAGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.6=85.4)
A:
NA
C2:
PF0008921=Trypsin=FE(44.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCATGTGACTGGTGAT
R:
TCTGTTCTGTGGGTCCTTCCA
Band lengths:
351-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]