HsaINT0132983 @ hg19
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31151813-31152931:-
Coord C1 exon
chr16:31152790-31152931
Coord A exon
chr16:31152079-31152789
Coord C2 exon
chr16:31151813-31152078
Length
711 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATTGGACCTTGTTCCAACAGGCC
3' ss Score
8.78
Exon sequences
Seq C1 exon
CCTGTGGCCTGCGGCTGGAGGCTGCTCCAGTGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCATGTGGCTGGTGATCGAGTCTGCACTGGGATCCTCCTGGCCCCAGGCTGGGTCCTGGCAGCCACTCACTGTGTCCTCAG
Seq A exon
GTGGGTCTCACTCGTCTCCTAGGCGAGAGACGGGAGGGGAGAATGGAACAGAGCCAAAGACTTGTTTTTGTTATTTGTTTGTTTGTTTGTTTAAAAAAAATTAACAATGAGATCTTGCTGTGTTGCCCAGGCCAGCCTCAAGCAATCCTCCTGCCTTGGCCAACGTACTAAGATTACAGGCATGAGCCACTGTGCCTCACCCAAAGGACTCTTAAAATAGTGGGATATTCTCCTTTAAGCATCTTACAGCTGGGCGCAATGGTTCACACCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGTTCAAGACGAGCCTGGCCAACATGGTGAAACCCCTCTACTAAAAATACAAAAATTAGCCAGGGGTGGTGGCAGGCGCCTGTAACCCCAGCTACGTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGGAGGGCAGAGGTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGTCGGAGCGACAGAGCAAGACTCTGTCTGGGGTGGGGCATGAGGGAAGAATCTTACAGCACTGGGAGATGTTTTGACCTAGAAGGGAGATTTGGAAGGAGGGATGATGAAGGAGTGAGTGGCATGACCCCAGAGAGTCATCCTTCCCCTGGGCTGGGAAGGACTTTGCCAGCAATGGGAGGAGCAGAAGGTGACATTGGACCTTGTTCCAACAG
Seq C2 exon
GCCAGGCTCTACAACAGTGCCTTACATTGAAGTGTATCTGGGCCGGGCAGGGGCCAGCTCCCTCCCACAGGGCCACCAGGTATCCCGCTTGGTCATCAGCATCCGGCTGCCCCAGCACCTGGGACTCAGGCCCCCCCTGGCCCTCCTGGAGCTGAGCTCCCGGGTGGAGCCCTCCCCATCAGCCCTGCCCATCTGTCTCCACCCGGCGGGTATCCCCCCGGGGGCCAGCTGCTGGGTGTTGGGCTGGAAAGAACCCCAGGACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-PRSS36:NM_173502:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.7=81.2)
A:
NA
C2:
PF0008921=Trypsin=FE(44.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGGCTGGTGATCGAGTC
R:
CTCGGTCCTGGGGTTCTTTCC
Band lengths:
346-1057
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)