MmuINT0127471 @ mm10
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127933567-127934280:-
Coord C1 exon
chr7:127934139-127934280
Coord A exon
chr7:127933833-127934138
Coord C2 exon
chr7:127933567-127933832
Length
306 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACTGGTTCCTATTCTCACAGGCT
3' ss Score
7.59
Exon sequences
Seq C1 exon
CCTGTGGCCTAAGGCCAAAATCCACTCCAGCTGGTGTGTTGTGGCCCTGGCTGACGGAGGTGCATGTGACTGGTGATAGAGTCTGCACTGGGATTCTGGTGGCCCCAGGCTGGGTCCTAGCAGCCACTCACTGTATTCTCAG
Seq A exon
GTGGGTCTCTCCTAGCTAGGAGGCAAGGTGAGGAAAATTGGGTGATAGATGAAGGATTCTTGCAGCAGTAGGACGTCATCACGCTTAGGCTCACACAGCACAGAGAAAGCCCCCCCCGCCGTGGGTGTTTTTGTTGGGGTGGTTTGGTTTGGTTAGATTTGAGAAGGCAGAAGAGAGAGGAATCACAGAGCAGTTGGTGGGTGGTCCTAGAGACCACTTCAGCCCTGTTCTGCTGGGAAGGACTTCACCAGCTATGGAAGAAATAAGACAGGATGCTGGTTCTGATACTGGTTCCTATTCTCACAG
Seq C2 exon
GCTGGGCTCTACAACAGTGCCCTACATTGAAGTATATCTTGGCCGGGCAGGGGTCAGCTCCCTCCCACAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTGCCCCGGCACTTAGGACTTAGACCCCCCCTGGCTCTACTGGAGCTGAACTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGGGGGTATTCCTTCAGGGGCCAGCTGCTGGGTTTTGGGCTGGAAGAACCCACAGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371:ENSMUST00000118755:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.5=85.4)
A:
NA
C2:
PF0008921=Trypsin=FE(44.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCAAAATCCACTCCAGC
R:
CCTGAAGGAATACCCCCTGGG
Band lengths:
354-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types