MmuEX0037447 @ mm10
Exon Skipping
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127933371-127934516:-
Coord C1 exon
chr7:127934355-127934516
Coord A exon
chr7:127933567-127933832
Coord C2 exon
chr7:127933371-127933492
Length
266 bp
Sequences
Splice sites
3' ss Seq
ACTGGTTCCTATTCTCACAGGCT
3' ss Score
7.59
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ACTCATGGTCCGTGGATCCGTCATGTGACTCAGGGAGCTTACCTGGAGGACCAGCTAACCTGGGACTGGGGCCCTGAAGGGGAGGAGACCGAGAAACAGACTTGTCCCACACATACTGAGCACGGTGGTGAGCAGGGGTCTGTGAGGCTTCAGGAGTTCCTG
Seq A exon
GCTGGGCTCTACAACAGTGCCCTACATTGAAGTATATCTTGGCCGGGCAGGGGTCAGCTCCCTCCCACAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTGCCCCGGCACTTAGGACTTAGACCCCCCCTGGCTCTACTGGAGCTGAACTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGGGGGTATTCCTTCAGGGGCCAGCTGCTGGGTTTTGGGCTGGAAGAACCCACAGGACAGAG
Seq C2 exon
TTCCTGTAGTTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCCGGGTATTCTGACTCCTGGGACCTTCTGTGTCCTCTATTCAGAGGGACAGGAGGATAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371_MULTIEX1-3/4=1-4
Average complexity
C2*
Mappability confidence:
88%=88=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=FE(44.5=100)
C2:
PF0008921=Trypsin=FE(20.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATGGTCCGTGGATCCG
R:
CTCACATCTATCCTCCTGTCCCT
Band lengths:
284-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types