MmuALTA1041497-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127933433-127933832:-
Coord C1 exon
chr7:127933567-127933832
Coord A exon
chr7:127933484-127933492
Coord C2 exon
chr7:127933433-127933483
Length
9 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CAGTTCTCTCTCCTCTCTAGTTC
3' ss Score
8.06
Exon sequences
Seq C1 exon
GCTGGGCTCTACAACAGTGCCCTACATTGAAGTATATCTTGGCCGGGCAGGGGTCAGCTCCCTCCCACAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTGCCCCGGCACTTAGGACTTAGACCCCCCCTGGCTCTACTGGAGCTGAACTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGGGGGTATTCCTTCAGGGGCCAGCTGCTGGGTTTTGGGCTGGAAGAACCCACAGGACAGAG
Seq A exon
TTCCTGTAG
Seq C2 exon
TTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-23-28,23-27,23-26-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(44.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGGTATTCCTTCAGGGG
R:
AGTGACAGAGTCGTGGTGTCA
Band lengths:
102-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types